DmeINT0012371 @ dm6
Intron Retention
Gene
FBgn0266354 | CG45002
Description
This gene is referred to in FlyBase by the symbol DmelCG45002 (FBgn0266354). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is X:16969069..17066732. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 14 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:16976182-16976548:-
Coord C1 exon
chrX:16976335-16976548
Coord A exon
chrX:16976277-16976334
Coord C2 exon
chrX:16976182-16976276
Length
58 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGTCCAAGTTCTTTTTGTAGGTC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GAACTGGTGGCCATTTCCCCGGAACGCCGCAACTGGCGTGGCATCTTCATCGCCCTGCTGGTCATCGCTGCCGTTTTTAGCCTGATCATATTCTCGATCTTCCTGCTGTCGCCGGAGGATGAGGGTCTACGGATCCGGGGTCGCCGGATGCTGCCCAGCGACATTCTGGGCAGAAGCCTCCAGTGGAAGCCCTTCAACGGCACCTGGAGCAATG
Seq A exon
GTGAGTCCTGCGATACATGTTGCAAGTCCTTCTTAGTGAGTCCAAGTTCTTTTTGTAG
Seq C2 exon
GTCGTGAGCTCATTTATCGCGACCCAACGGGCGGCCTCTCCATTCTCAATATGGCCGATCTTACCACACGCATCCTAATGACCAATTCAACATTC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266354:FBtr0344097:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0310523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0310521, FBpp0310522, FBpp0310524, FBpp0310525, FBpp0310526, FBpp0310527
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGGATGAGGGTCTACGG
R:
CCGTTGGGTCGCGATAAATGA
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)