DmeINT0012376 @ dm6
Intron Retention
Gene
FBgn0266354 | CG45002
Description
This gene is referred to in FlyBase by the symbol DmelCG45002 (FBgn0266354). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (6 unique). Gene sequence location is X:16969069..17066732. Its molecular function is described by: serine-type peptidase activity. It is involved in the biological process described with: proteolysis. 14 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chrX:16973447-16973860:-
Coord C1 exon
chrX:16973666-16973860
Coord A exon
chrX:16973608-16973665
Coord C2 exon
chrX:16973447-16973607
Length
58 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGG
5' ss Score
7.34
3' ss Seq
TAATATATATCACTTTATAGGTA
3' ss Score
7.69
Exon sequences
Seq C1 exon
CGATGCCTCGCCGGGATCACAGTTGGTAACAGAGCGCTTCCACGTGGACTGGAACTGGTATTTGGCCAGCCAGAGGAGTTTTATTGTGGCCCAGATCGACGGGCGTGGCAGTGGCTTCCAGGGTGAATTGCTCCGCACCCAGGTGCACGGTAAACTAGGCACCGTCGAGGTGGAGGATCAACTAGGAGTCCTAAC
Seq A exon
GTAAGGGAATCCCCATGAACATAGTATATATAAGCATCTAATATATATCACTTTATAG
Seq C2 exon
GTACCTGCGGGACAACCTGAAGTTCATCGATCCGCTGAGGATTTGCGCTTTTGGCTGGGGCTACGGTGGCTACGCCTCCTCCATGATGCTCATCGACGACTCGCAACAGGTGCTGCAGTGCGCGGTGGCAATCAATCCCATTGTCAACTTTGGATTCCACT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266354:FBtr0344097:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=PU(25.2=78.8)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(26.2=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0310523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0310521, FBpp0310522, FBpp0310524, FBpp0310525, FBpp0310526, FBpp0310527
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGTAAACTAGGCACCGTC
R:
CGTCGATGAGCATCATGGAGG
Band lengths:
148-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)