DmeINT0014907 @ dm6
Intron Retention
Gene
FBgn0038626 | CG7691
Description
This gene is referred to in FlyBase by the symbol DmelCG7691 (FBgn0038626). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3R:18559869..18561353. Its molecular function is described by: sequence-specific DNA binding; DNA-binding transcription repressor activity, RNA polymerase II-specific. It is involved in the biological process described with: negative regulation of transcription by RNA polymerase II. 10 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of no expression detected. Peak expression observed at stages throughout the pupal period, in adult male stages.
Coordinates
chr3R:18559869-18560357:+
Coord C1 exon
chr3R:18559869-18560053
Coord A exon
chr3R:18560054-18560119
Coord C2 exon
chr3R:18560120-18560357
Length
66 bp
Sequences
Splice sites
5' ss Seq
AATGTAATT
5' ss Score
1.5
3' ss Seq
ATGCATGCTTATCCCTCCAGAAT
3' ss Score
6.94
Exon sequences
Seq C1 exon
AAATAAATTTTTTATAAAATAACTTTGTGGCAGATTGATCTTGTGATGATATGGAATAAACATCAATAGACCACTGAGTAAACTAATTTTTTTCCTTTACAAATAAAATCTGATTGGATACGAAAATAAAGGGATTTACTTTTCAAAAGTGACATACCGAAGCCCGATTATTCCGCTGAGAAAAT
Seq A exon
GTAATTAATCTAAGGAGTAAATACCCTCGATGGACTTATTCAAGTTATGCATGCTTATCCCTCCAG
Seq C2 exon
AATGGTACAATTTTTTCAAGTGCATTGTTACTGTCCTGGCAAAATGTAATTTCCAATCGAGTGGGCAACGTCAATCAGTGCTTTGTAGCTCACTGACTTTTCGGGGCCTGTAAAATTCGGAAAATTTGACAGCAGCTCGGTGGTAAGGTGAATTTAGCAATCATGCCAAGAATTTTTCGCAGTTTCTTGTCCGATCGCTATAATGGCAAGCAGGAACGATTCTACGACCGATATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0038626:FBtr0083631:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0083051
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACATACCGAAGCCCGAT
R:
CCACCGAGCTGCTGTCAAATT
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)