DmeINT0018873 @ dm6
Intron Retention
Gene
FBgn0000409 | Cyt-c-p
Description
NA
Coordinates
chr2L:16719932-16722644:+
Coord C1 exon
chr2L:16719932-16719976
Coord A exon
chr2L:16719977-16722008
Coord C2 exon
chr2L:16722009-16722644
Length
2032 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
ACAAACATTTCTTTTTACAGTCG
3' ss Score
7.45
Exon sequences
Seq C1 exon
TCGTCATTCGTGAAAAATCGGCGACGCTCGACGTTTGTGTTCAAT
Seq A exon
GTAAGTAGTGGGTGGAATTTTTGTATTTTCAAGTGACGTAAATATTACCTTGAATAGTTATTGATTATCAAGCCCCAAGTCAGATAAAGATTAGAAACACTTCCGTGTCATTTACGTAACATCCAGCAGCTGTGTTTTGTTCTGAAAATGATTCGCATGCAAATTTAACGTATTCTTTGGGGGATGATTCAGGTTACATAAACGTGTCCTTGTGTGTGTGTGTATAAGTGTGATTTTTTATTAGATATTTAATAGTTTATTTAGCAAATATTAGCAGTGGTGTATTAATAGTAAAAATAGCATCCCAAAGTCACATTGCCATTGAAAAAAGCCCCGGAGAGAGTCGATTACATGAGCAAAGAGAGTGGCGTACCCGATCATCAGCTGTCTCGCTCGCTCAGTGGCAAAAATTAATTCTTGGATTTTTTGTCAATGCTTCAGCTTTGGAGTCTTTAAGCGCGCCACGTGGTTGCTAAGCAGGTTTTGCTTTCTGCGATGTGCAGTTTTCTATAATATAAATAAAAGAGAATTCACCTCTGCGAAAAGGCGGCTTATGTAACATTCGCTGCTCTCAGGAAACTTGGATGTTGGCCCAATTTTCACTCATCTCTTTGTTCTCACCACCTTGCTCACCCACACAAGGAAAAACACAGCTGCCTTTGGCCTGCTTCCAATTTTCCAATTGCACTTTCCCTTCATCTCACGCACACTCACGCACGGCAATTAACTGAAAAATACTCAACAAGGCCAAATCGGATGTTGACATTGTTGTTGCTTTGCCACCTCTCACTGCCAAAGTGCATGATACTCTACACAGAAAGAAGTGAAAAAAAGGTTGATATTAAATGCAAATTATGTGTAAAAGCGCACAAAATCAATAGTCTATATATATTAGGTTTGTTTTTATAGACAAATGCATATAAAATAAAATTAGTTTTCTAGAATTGAAAGAGCTTCAGCTAATCGAATTTCTCTCAGTCTATGTGCGTGATGTGTAGGTGAATTACTCACCGCAACGGTACTTTGCACTCTCAAGTTCAAATTGCTGCATGCAATTTATAATCCGGCAATTAGCAGGATGACCGTAACACAGACCCTGGAATAATAGAATAGTTATGTAAACAACTAACGTTTTTCGTATTATGATGCTTCCTGGAAGTTTTCCGCCTGTTGCTGAGCAGTTCTGACGCAATTAATCGGCGACTGGCAAATATAAGCGAGTGAGACACAAAGAGAGTGTGAGAAGGAGAGAAAGAGTGTGGGGGCAACATGTGACCAGCGTCTGAAGCTTTTTCAAAGTGTGTTTCTGATGACGTTGCGACGCCCTCCACGCGCGTATTAGTGAGAGCAAAGTATGTGGGTTAAAAAGGGGGTGGCCGCAAATGGAAATGCAGACTACGTTAGATAATAATTTCGGGCCTTATCAGAAACAACAGCCGACTAATGCACTTAGCATGAGCAATTTTAATAATTCCGTTTCCGCAGGGAGCTTATCAATTGTTTACATAACGGGGCAAGGGGACAAATATTAATTCACGGTCCATAACTACCTACATTAACCCATTATTTCCCAAGCATGGAAATTTTTGATGATATAAAGACGTTATTATTTTAATACCTTAAAAATATATAATATTATATAAGTAACGTTGGGAAATCAACTGGTTAATAAATTTTAAATTTCGGGTTTATTTATTCAATAATCTTTTGATAATGTATGGCTGAAAGTGAAGCTTTTATCAGTATCTACACAATGGTTCATTGGGGCTAATAATAAATGGTATCAAATATCGTATAACTATTTTTTGCAGTGAAACCAGAATTTCGGACTAAGTACATAAGCAAATGATATAAAATATATATTGTAATCAATTTATCAGAATAGAACAAATTAATTGGTAGCAGTTATGAACTTTGAACCATTTAGTAGCCAGTTTTTTAAGTTTTTCAAACCTAAGATGTAAGATAACAGATATATTGGTTACCCTTGTTTTATGAACCACTCATTAATAACAAACATTTCTTTTTACAG
Seq C2 exon
TCGAGTCCGTGTTAACACATTAATTAACCACATAATCCATAATGGGCGTTCCTGCTGGTGATGTTGAGAAGGGAAAGAAGCTGTTCGTGCAGCGCTGCGCCCAGTGCCACACCGTTGAGGCTGGTGGCAAGCACAAGGTTGGACCCAATCTGCATGGTCTGATCGGTCGCAAGACCGGACAGGCGGCCGGATTCGCGTACACGGACGCCAACAAGGCCAAGGGCATCACCTGGAACGAGGACACCCTGTTCGAGTACCTGGAGAACCCCAAGAAGTACATCCCCGGCACCAAGATGATCTTCGCCGGTCTGAAGAAGCCCAACGAGCGCGGCGATCTGATCGCCTACCTGAAGTCGGCGACCAAGTAATGGTGCTGTCCATCAACTTACCCACAACCACTGCAGGATGTCAAACTGTATTATTGTGTTCAGTCACAGTCCGGCACGCAAATGCAGCAGCAGCAACAACTACAACTACAAATCAACATAGTACAGACCTAAAGAACTACAATTATGTTAATTATAAAGTTTAAATAGGACAATTTATTATTTAATTTAAATAAAAAGTGGAATATTTAATTCAAACCCGATGAGAATTGTGACATCCACAAAAAAGTTAAATAATAAAAAAAGAACT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000409:FBtr0080889:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0003416=Cytochrom_C=WD(100=91.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0080446, FBpp0311164
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)