DmeINT0028158 @ dm6
Intron Retention
Gene
FBgn0030330 | Tango10
Description
The gene Transport and Golgi organization 10 is referred to in FlyBase by the symbol DmelTango10 (CG1841, FBgn0030330). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is X:11720245..11723854. Its molecular function is described by: . It is involved in the biological process described with: protein secretion. 6 alleles are reported. No phenotypic data is available. No phenotypic class data is available. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
Coordinates
chrX:11722251-11723854:+
Coord C1 exon
chrX:11722251-11722408
Coord A exon
chrX:11722409-11722533
Coord C2 exon
chrX:11722534-11723854
Length
125 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
TGGGTTATTCCTATTTTCAGATC
3' ss Score
8.71
Exon sequences
Seq C1 exon
ATCCCTGCATGACATGGGAAATCGAGTTTTTCCCGCGAGGCGTTAGGTATAACAAGGCCAAAATGGTATGGGGCGAGGACGTACCAGGCTGCTCTTTGAACACAGTGCGTCTACGGGTTACCTGCAAGCATCAAAACATCGGAGAGGAGCGATTTAAG
Seq A exon
GTGATTAAGCGGCAACCGTAATATTCTGTTGGGAATCAACGAGTATTGGCGCTAGTTTCCCAGTGTATTTGTAGTATTTTGTATTTGTAGTTGTATATTCTTTCATGGGTTATTCCTATTTTCAG
Seq C2 exon
ATCGCCGTGCTGATCGTTGGCATGCAAAACCAGATTATGCACATCCGCACAGTTGTAGAGCGTACGGAGTACTTCTCCGATACGTCGCGCGTCGTCAACCTGGACAACCTGCTGCCGTACGAGGAGCTGGAGCACACATCACTGTACTTGAGTCCCCATCTGACGGGCACCGCTCGCAACACGCTTACCCTGCACGTGGTCATCACGCCGATGGGCTCCCACACCTGCCGAGATACGCCGCCGTTTCAGTTCTAAAAAAAAAAAACACAAATTATGAAGCGGTCCTGTGGGCATCTCAACTATAGCACTCCGTACTTCCCGGCGCATCCACAGGCACCTCATGCATCCACAGCCACCACTGTATTTCAAACTACCATTTAACATGTGTATGTATGTAAAAATCCAATGCGACTGCGAATCCCATGGGCTCAACCTTTGCGATCTTAACTGGCGGTCTACACCGGCCCCCAATCGATCACAACTCGATTGCAATATGATTTGTTATTAGTTTATTGTTTTATATTACACTATTTCCTTTAAGTTAGGCGCAGCGAGAGTTACTGAGTGAGTGAGTTCGTAGGCAGAGCCATATTAAAGTGATTGATTGGACACGACGCCCATTTGGTACTGTATTCACCTTACCATTTCGCAGAATTACCGCAAATGAAAATGGACTATGGAAAGGAGTTTTTCTAATAAACGTTAAACTGTAAACTAAAAAAGAAAACCATAAAATCGCCGACGACATGGCTGAGAAAGAGAGAGAGGGTCACTATTTGGCTATTTGCCATCTCGTTTGCATGAGGCATCAGTTTTAATGTTTTACAGCGCCCGCTTAGGCTTTTGGATCCCTTTTTACGAGTGCGTTTATGGCCCGGGATCAACATGTCGCGTCTCGGGGGCCTATCTTTATGTGTGCTCTACTGTCCATATAGTCTACAGTGCGGAACATCAAATATGTCATATTTAGATGGGACTCTGGGCTCTGGTCTCCGGATATCCAGATATCCAGATAGCCAGATAGCCAAGACATAACGAATATACATGCACAGATGTGTGAATCGGTTCAGGTATCGGCCATCAATCGAATTGATTTAATCTTGGCGTTAATGTAGTTGTTAAATAAAATGTCTCTTCAAAAATCAGCTGTGGTCTATTATTATTATGCGTTTTCATTAGACTGAACTAAAGAGTGTAGAATTACTGTCATTTAACGATATAATTTAGTGATTTCGGTTTTAATTAAATTATTGCCTAACGTTGACCAGTCATTTTGTAAAATAACGTCTCTGAGAAACCTGGAATAAAGGTGTGTAAAACT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0030330:FBtr0073553:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0073397
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0073398, FBpp0305171
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACGGGTTACCTGCAAGC
R:
GATGACCACGTGCAGGGTAAG
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)