DmeINT0028498 @ dm6
Intron Retention
Gene
FBgn0021796 | Tor
Description
The gene Target of rapamycin is referred to in FlyBase by the symbol DmelTor (CG5092, FBgn0021796). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (2 unique). Gene sequence location is 2L:13004480..13013197. Its molecular function is described by 6 unique terms, many of which group under: binding; transferase activity; protein binding; transferase activity, transferring phosphorus-containing groups; protein serine/threonine kinase activity. It is involved in the biological process described with 34 unique terms, many of which group under: transmembrane receptor protein tyrosine kinase signaling pathway; enzyme linked receptor protein signaling pathway; cellular response to organic substance; positive regulation of wound healing; dendrite morphogenesis. 44 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane bounded cell projection; neuron projection; cell projection; cell cycle; cellular process. The phenotypic classes of alleles include: cell size defective; phenotype; sterile; cell cycle defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-18 hour embryonic stages, during early pupal stages.
Coordinates
chr2L:13005431-13007086:+
Coord C1 exon
chr2L:13005431-13005997
Coord A exon
chr2L:13005998-13006352
Coord C2 exon
chr2L:13006353-13007086
Length
355 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
ATAATATCGACATCCAGCAGCAC
3' ss Score
0.29
Exon sequences
Seq C1 exon
TACCGCCGCCATTCAGCCGTCTTTATCCTCCGTGAGCTGGCTATCGCCTTGCCCACATACTTCTACCAGCACATCCTGACCTTCTTCGAGGTTATCTTTAACGCCATCTTCGATCCCAAACCTGCTATACGAGAGTCAGCTGGCGAGGCTTTGAGGGCGGCTTTGATTGTCACCGCTCAGCGAGAGAGCACCAAGCAGTCCAGTGAACCACAGTGGTACAGAATCTGCTATGACGAGGCGAATGGAAGCTTCAATGCAGACTTGGGCTCTAGCAAGGATCAGAAAGGCGTGACCCGAGACGATCGCATTCACGGTGGCCTCGTCGTCTTCAACGAGCTCTTTCGCTGTGCCAATGCCACCTGGGAGCGGCGCTACACGTCTCTGAAGACGCTGTTCCCCAAGACCCAACACAATAAGTTCCTGGAGGCCAGCAGTTCGTCGAGTATGGGTTCCCAGCTGAATACTCTAGTGCCGCGGCTAAAGGTGCCCTTCATTGACAAGCTCGGCAGCACCCAAACGCATTTGGGTGAGGGAGAGCATCACAAAGGAGTTGCCAAGTTCGCGAGC
Seq A exon
GTGAGTCTAACGATCAAATACCTCCACACACGAATGTATTTGTCATTTTCATTTATTTACCTTTTGGTTTACGTAGTATGTACTTTACATGTATCTAAAAACCAAGCGATGCCTGACGGGAGGAAATCAGCTGACCTAATTATAGTTTAAAAATTGTGTAAAATGTAGCAGTAGAGTGTGATTCGTTACCAGTAGTAATTGTGGGGCGGCAATCATTTAGACAAGCATGTTTGTATTAAAATAGTATATTTTCCATTTGTTCATTACAAAAAAGATATTTTAATGTTTGTTAATTTAAAATACAAACTATTTAGTTATGTTTAAGCAAGTAACTAATAATATCGACATCCAGCAG
Seq C2 exon
CACAACGTACTGGAGTCCGCATATGCTCAGGAGATCCTTCAGGAGCACTACACCTCCATTTGCGACAATGTTTTGGAGCAGCGAACTTCGAAGTCTCCGTATGTACAGCAGGCACTCCTTCAAATACTTCCTCGATTGGCTGCCTTTAACCGCGCGGTGTTTGTGGAAAAATACCTGCAGACATGCGTGTCGCATTTAATGCAGATCCTGCGAGGCAAGGAGAAGGATCGCACGGTGGCGTACATAACCATTGGTTACATGGCTGTAGCGGTGCAGAGTGCGATCGAAGTTCATTTATCCAGTATAATGACTAGCGTGAAGGTCGCCTTGCCGTCAAAGGATTTGACCAGCAAACGAAAGGTACCAGTGGATCCTGCGGTCTTTGCCTGCATAACGCTTCTTGCTCATGCCGTTAAGTCGGAGATCGCCGACGATGTTAAGGATATCCTTGAGCAGATGTTCTACACGGGTCTCTCGCCAGCTCTGACTGTTTGCCTGAGGGAACTCTCCGAGAATGTGCCGCAGCTTAAGTCGGCCATTACAGAAGGATTGATCGGAATCCTATCCCAGGTGCTGATGAACAAGGCGGCAATTTTACCATACACTGCTTTGCCAACGATCGCCATCGATGGCTCGCTAATGCAGAATGGTGACGGAGCAACCACAGTGCTGGCACTCAAAACGCTGGGTACCTTCAACTTTGAGGAGCAAAACATGCTGGACTTTGTGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0021796:FBtr0080422:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0080003

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCATTTGGGTGAGGGAG
R:
GAACTTCGATCGCACTCTGCA
Band lengths:
345-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)