DmeINT0032909 @ dm6
Intron Retention
Gene
FBgn0032484 | kek4
Description
The gene kekkon 4 is referred to in FlyBase by the symbol Dmelkek4 (CG9431, FBgn0032484). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 2L:13212335..13215350. Its molecular function is unknown. The biological processes in which it is involved are not known. 12 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: auditory perception defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed during late pupal stages.
Coordinates
chr2L:13213009-13215152:-
Coord C1 exon
chr2L:13215082-13215152
Coord A exon
chr2L:13214826-13215081
Coord C2 exon
chr2L:13213009-13214825
Length
256 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CTTTTCTTTTTACTTTACAGCAT
3' ss Score
11.04
Exon sequences
Seq C1 exon
CTGGAAGAACATTTTCGAAACGAGCTTAAGGCGTGGCGCGATAGTAAATTTATATTGTTTTTCTAAATCTG
Seq A exon
GTAAGCCAACAAAGTGCAGCATTTTCCCACGGCCAGTGTCAGACAGCCGTACACGCAATTTTTCAATGTTTAATGCCATACTGTTAAAGAGAAAACGGGAAAAGTGGCCTTGAAGTGGCAGTTCCCTTGGGGCAGGTAATGGGAACTTCTTGTCAGCCTACATACATATATCATCGAAGAGAAAGGCAGTTTCAAATATTTATTTACATTTAAATGAGAATAAACTAATGAAATACCTTTTCTTTTTACTTTACAG
Seq C2 exon
CATGGCTTTCAGGATTATAATGCTAGGCGAACAACGATTTAATGACGGACACTGGACATGAGCGAAAATTAAGCAAAAACAATCAAATGTGCATCAAACAATAACCCAGACTAACTGGGATGTGCTAGACCTTCCGTTCCTTAGAAAAATCTCAATGGCCATCAAGCTTAGCTTCGATCCATGTAGTATTTCCTTAAAGCACCTGTCGCTATTCCTATTTAAGATATACTGCTTGGCACTCATATTCCGAAGTGCCAGTGCCGATTGGCTATTGGACTGTGGAAACTGTCACTGCAAATGGAACTCTGGCAAGAAGACGGCCGACTGTCGCAATTTGAGTCTGAGTGGAGTCCCAGAGTACCTCAGTCCGGAGGTTCAAGTGCTGGATTTGTCACACAATCATATATTCTACCTGGAGGAGAACGCATTCCTCACGACCCACTTGCAAAATCTTCAAAAGTTACTCATCCGAAATGGCACCCTGAAGTACCTGAATCAGCGAAGTTTCACCCAACTGCAGATCCTAATAGAGCTCGACTTGTCCAATAATCTACTTGTCGACCTGCTACCCAATGTGTTCGACTGTCTTTCGAAAGTGCGGGCGATATTCCTGAATGGCAACCTGTTGCAAGCACTTCGCCATGGAGTCTTTCGTAATCTCAAGTATCTGCACAAGATCGAACTTAAGCGCAATCGCTTGGTTAGCATCGATGCCAAGGCCTTTGTGGGAGTACCACTTCTCTCGCAGATCTATCTGGACAACAATGAGCTGACCAAACTGAGAGTGGAGAGTTTCCAGGACTTGACTAAGCTCACAGCATTATCGCTGGTCGAGAATCCTTGGAACTGCACATGCGATCTTCAGATGTTTCGTGACTTCGTTATAGGCATGAACCTGTATACACCGCCCACATCCTGCCATTATCCTTTGCAGTTACGTGGTCGTCTGTGGATCGAGGATCAGCCGGAGGCGTTTGCCTGCAAGCCGAAGATTGTGTATCCAACACTCAGTACTTCCATCAACACTTCCAAGGAGAACGTAACGCTTATATGTCGCGTCCACGGATCTCCCAATACGGTTATTGCCTGGGATTACACCAATCAAGTATACGAATCCCGCTCCAAGCCGGTGAAAAGTCTGCAAAAGCAGCGCATCTACATAGAACTGTTGCGTGAGGATGAATCAAAGATTCGAAAATTCGGACATGATGTTTTTGTGTCACGTCTAACGATAGTTAATGCCCGTAAGAGCGATGAGGGCGTCTATACCTGTCTGGCGGAAAATCCCGGTGGCAAGGATTCGGTTCACATAAGTGTGGTGGTGCAAAAGGATATGGAAAGGATTTCCCTCATCGACAGCAACTTCTTTGCAATAGTCTGCCTTATAGCCATGGGTTTTCTCAGCATGTCGATTCTATTTTCGTTGGTAACATGCCTAATATTTAAGAGATTCAAGCAGTTCCATCCCGGCCAGCACACTTATTTGCAACCCACTAGTTTGCCCGTTCAGTCACCTGGCAGTGAAGAAGCCACCGCCATCAGCGCCCTAAGTTCTGGAGTTATAAGGGAAAGTAAAATAGTGCTGGATCCATTAAGTGCTATCAATGAACCATCAAATAAAAATTACACTTTATTTAAAACATCCAATTCGAATGGCAGCGAGTATATGCACACGAGAAATTATAAAGACGTGAGATTAAACAGCAACACATATACTGAAAATCTAGACAATCAGGCGGAATCCATTTCATCGCGGAATCGGGAGCTCTATTCAAATATAGCTGGTGACCGGGAAAAGGAAGAGCTCAAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0032484:FBtr0080485:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.114
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138551=LRR_8=WD(100=11.4),PF138551=LRR_8=WD(100=10.8),PF0767911=I-set=WD(100=20.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0080064, FBpp0306797, FBpp0306798
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGGCGCGATAGTAAATTT
R:
GGCACTGGCACTTCGGAATAT
Band lengths:
303-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)