DmeINT0037518 @ dm6
Intron Retention
Gene
FBgn0086899 | tlk
Description
NA
Coordinates
chrX:3784528-3785224:+
Coord C1 exon
chrX:3784528-3784706
Coord A exon
chrX:3784707-3785031
Coord C2 exon
chrX:3785032-3785224
Length
325 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCTAACAACACAAAATTCAGACA
3' ss Score
-2.1
Exon sequences
Seq C1 exon
TCCCGCTTTAACAATCATCCCGTGCTGAATGATCGCTATCTTCTGTTGATGCTCCTGGGCAAGGGCGGCTTCTCAGAGGTCCACAAGGCCTTCGACCTGAAGGAGCAACGCTATGTCGCATGTAAGGTGCACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTATATCAA
Seq A exon
GTGAGTAGTAAAACAGAGCAGGAAAAGTCAATGGGGGAATGCAATGCCAATTGGTTAGACAATAAGGATATAGTTTTCTTAAAGGTCACATTAGCTGCTGCTACTGCTGTGGTGTATTTCAAAATATCATGGTACTTTTAGGTCAGACTTTTTGCGTAGATGATATATATTTGTGGTGCAATACATCTTTCTATCAATTATAATTGTATCGTAAAGTGAAATAACACACACTTTAGGGATAAAATGTAAATGCTCAGCTTTATATTTATATAAATATACTAAAGTCTTCCTCTTTTAAAACCCTCGCTAACAACACAAAATTCAG
Seq C2 exon
ACACGCTTTGCGGGAATACAACATTCACAAGGCACTGGATCATCCGCGGGTCGTCAAGCTATACGATGTCTTCGAGATCGATGCGAATTCCTTTTGCACAGTGCTCGAATACTGTGATGGCCACGATCTGGACTTCTATTTGAAGCAACATAAGACTATACCCGAGCGTGAAGCGCGCTCGATAATAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086899:FBtr0112680:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF096065=Med15=PD(2.5=16.7),PF0006920=Pkinase=PU(16.8=78.3)
A:
NA
C2:
PF0006920=Pkinase=FE(22.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0288856
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0099673, FBpp0111592, FBpp0288854, FBpp0288855, FBpp0288857, FBpp0288858, FBpp0290873, FBpp0305893, FBpp0305894, FBpp0305895, FBpp0311479
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGCTGAATGATCGCTAT
R:
TGCATTATTATCGAGCGCGCT
Band lengths:
353-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)