DreALTA0000076-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000006901 | AEBP1 (1 of 2)
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:HGNC:303]
Coordinates
chr8:44782331-44782868:+
Coord C1 exon
chr8:44782331-44782423
Coord A exon
chr8:44782785-44782787
Coord C2 exon
chr8:44782788-44782868
Length
3 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
GGATATTTCTTGTCTGTCAGCAG
3' ss Score
2.85
Exon sequences
Seq C1 exon
ATGATGACTATTGGAAGGTGGATGAGCCCACGCCAACGACTTCTGTGATCGCCGGTCGTCCAGCTGACGATGATGATTACTGGGATGCGAGAT
Seq A exon
CAG
Seq C2 exon
TGGAGATGGTGGAAAACCTGCCTTTCCCTGATGGCAAAGAGATCAGCTCTACTGACAATGACTGGCAATACACAACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006901-5-8,5-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.947
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCAACGACTTCTGTGATC
R:
CCATCAGGGAAAGGCAGGTTT
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]