DreALTA0000895-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53189136-53189653:+
Coord C1 exon
chr3:53189136-53189200
Coord A exon
chr3:53189581-53189616
Coord C2 exon
chr3:53189617-53189653
Length
36 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGTTGTCTCTATGATTAGGAT
3' ss Score
8.79
Exon sequences
Seq C1 exon
TGGATCACCTTCTATCTTCAAAAAGCCTTTCCTCCCCATCTCTTCCCCTGTGACTGTAGCAACAG
Seq A exon
GATCTCTGACTCAGTCTACCTCAATGTCTCATGTAG
Seq C2 exon
AGGCAGCAGGACGATCATGGAGTAAGAAACCACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475-10-12,10-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.440
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACCTTCTATCTTCAAAAAGCC
R:
TGGTTTCTTACTCCATGATCGTCC
Band lengths:
96-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]