DreALTA0000898-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059475 | CAMSAP3 (1 of 2)
Description
calmodulin regulated spectrin-associated protein family, member 3 [Source:HGNC Symbol;Acc:HGNC:29307]
Coordinates
chr3:53191863-53193157:+
Coord C1 exon
chr3:53191863-53191987
Coord A exon
NA
Coord C2 exon
chr3:53192877-53193157
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ATCTATTAATGCAACAGCAGGTC
3' ss Score
-0.24
Exon sequences
Seq C1 exon
CAGGATGAAGCTCGACCAGAGGATGAGATGGAGAAGAGAAGAGCCGCATTACTTGAGAAACAACAGAAGCGAGCAGAGGAGATGAAAAGACGAAAACAGGAACAAGAGAGAGAAAGGGAGGCAAG
Seq A exon
NA
Seq C2 exon
GTCATCTTCAGTGGATGAGCCTCGCAGAGGAGAGGAGAGACCCCAGACACCTTCTACTCCCCCACCTCCCCGCACCCCTCCACCAGAGGGCACTCCTCAGCGGCGTGGTGACTTCACCCGCCAGGAATATGAACGGCGGCACCAGCTGAAAATAATGGAGGATCTAGATAAAGTCCTCCGCCAGAAACCCACTACTGTCAGAGGGGTCAAGAAGCAGAGGCCCAAAACTGTGTTTAGAGATGACTCAGACCTCTCCCGCAGCCCTGCCAAAGGGTTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059475-13-18,13-17-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGAAGCGAGCAGAGGAG
R:
GTCTCTCCTCTCCTCTGCGAG
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]