DreALTA0001117-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000089858 | COBLL1 (1 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr6:10118904-10121522:+
Coord C1 exon
chr6:10118904-10119012
Coord A exon
chr6:10121381-10121383
Coord C2 exon
chr6:10121384-10121522
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
AACACCTTGTTTTGCTTCAGTAG
3' ss Score
5.39
Exon sequences
Seq C1 exon
GGTCCACTCAGTCGCATCTCCTCCACTGAATCCTCCCTTAAAAGGACTAAACGGAGAGCTCCGCCTCCACCGTGTGATGGCTCCGCCTCTACAAAATCAGACAACAAAG
Seq A exon
TAG
Seq C2 exon
AGGAAGCTGAAGGGCAAGACAGGAGCTCAGACAAACACAGAGCTGTTATTTCTGACCGCTGTCCTGAGTTCGATAAAGTCATGAGTGAATTTGCAGAGTTGCTGCAGGAGTGGCGACAGAGCACACCGGCTTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089858-11-17,11-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.604
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCGCCTCTACAAAATCA
R:
TATCGAACTCAGGACAGCGGT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]