DreALTA0001152-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21240766-21241074:+
Coord C1 exon
chr22:21240766-21240908
Coord A exon
NA
Coord C2 exon
chr22:21241012-21241074
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTACAC
5' ss Score
5.08
3' ss Seq
TGTCAGTGTGTATTTTTCAGGGC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GAGACAGGGCTGGTGGTGATGACAGACATGGTGAGTCTCAATCACAGACAGAGTGGAGGGATGTACACAGACGAGGCCGTACCTGCGTTTCAACCACACACCTCTACCCTGGTGGCAGCTATGCACTCCCGATCTGGGACACG
Seq A exon
NA
Seq C2 exon
GGCAGAGAACCGTAGGCGTACATTCTTTCCAGAAACATGGATATGGCATTGCTTTAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530-18-24,18-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020717=A2M=PU(9.8=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACCTGCGTTTCAACCACA
R:
GGAAAGAATGTACGCCTACGGT
Band lengths:
96-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]