DreALTA0001236-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101017 | CT583642.2
Description
NA
Coordinates
chr3:32847777-32848628:-
Coord C1 exon
chr3:32848317-32848628
Coord A exon
NA
Coord C2 exon
chr3:32847777-32847970
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
3' ss Seq
GATGCTGCTGTGGTGTGCAGACA
3' ss Score
5.49
Exon sequences
Seq C1 exon
GATATTCCCTCAGACTGATTAATGGTAATAATGACTGCTCTGGGAGAGTGGAGATCCTGTATAATGGTGTGTGGGGAACCGTGTGTGATGATGACTGGGACATGAATGATGCTGCTGTGGTGTGCAGACAGATGGGATGTGGAGGAGCTGTCAGTGCACCACAGAGTGCTTCTTTTGGCCAGGGAAGGGGTCGAATTTGGTTGGATGATGTGAGATGTTCAGGAAGTGAATCCTCACTCACAGACTGCTCACACCGTGGTTTTGGAGAACATAACTGTGGACATTCTGAAGATGCAGGAGTTGTCTGCTTAG
Seq A exon
NA
Seq C2 exon
ACAGATGGGATGTGGAGGAGCTGTTAGTGCATCCCAGAGTGCTTCTTTTGGCCAGGGAAGTGGTCCAATCTGGTTGGATGATGTGGGATGTTCAGGAAGTGAATCCTCGCTGATACAATGCTCACGCAAAGGTTTTGGAGAACATAACTGTGGACATTCTGAAGATGCAGGAGTTGTCTGCACACAGGATAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101017-2-3,2-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=90.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACAGATGGGATGTGG
R:
TGGCCAAAAGAAGCACTCTGG
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]