DreALTA0001322-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4644408-4646496:-
Coord C1 exon
chr4:4646401-4646496
Coord A exon
chr4:4644480-4644482
Coord C2 exon
chr4:4644408-4644479
Length
3 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TGTGTTTTGTGCTGTTTAAGAAG
3' ss Score
5.32
Exon sequences
Seq C1 exon
GAAAACGCAGTGAACGGTGATCATCTGTGGCTGGAGACCAACTGCTCCGGTGAACTCTGCTACCTGGGTGAAGAAACCTGTGTGGCCAAGATCGCA
Seq A exon
AAG
Seq C2 exon
TCTGCTCCCCGGAGGAAGTGTGCGGCCTGTAAGATCGTGGTTCACACCGCCTGCATCGAGGAGCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-5-4,5-3,5-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(42.9=75.0)
A:
NA
C2:
PF0013017=C1_1=FE(42.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCTCCGGTGAACTCTG
R:
GAACCACGATCTTACAGGCCG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]