DreALTA0001323-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4640807-4642257:-
Coord C1 exon
chr4:4642201-4642257
Coord A exon
NA
Coord C2 exon
chr4:4640807-4640872
Length
0 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
ATGTGTGTTTGTGACAGCAGAAT
3' ss Score
2.76
Exon sequences
Seq C1 exon
ATCAACTTCCGCTGTAAACCCACTTTCAGAGAGGGCAGCTCTCGATGCCTCAGAGAC
Seq A exon
NA
Seq C2 exon
AATGTGTTGCGGCACCACTGGGTTCATCGTCGCCGACAGGAGGGAAAATGTCGACAGTGCGGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578-7-7,7-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(8.9=26.3)
A:
NA
C2:
PF0013017=C1_1=PU(28.8=73.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCAGAGAGGGCAGCTCT
R:
CGCACTGTCGACATTTTCCCT
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]