DreALTA0001413-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1353354-1354118:-
Coord C1 exon
chr19:1354023-1354118
Coord A exon
chr19:1353494-1353562
Coord C2 exon
chr19:1353354-1353493
Length
69 bp
Sequences
Splice sites
5' ss Seq
CCGGTCCGT
5' ss Score
4.84
3' ss Seq
GTGTGTGTTTCTCCTGTCAGGTG
3' ss Score
11.9
Exon sequences
Seq C1 exon
TGGAGGTGAATCCAGCTGTAAAGGGAAAACAGATGGAGGATCTGACTGGGCGTCAGGATGATGGACGTCCCTCCACATCCACTAAAACATTCACCG
Seq A exon
GTGTTATTAATAAAAGCTCTTCTCCCTCCTCCTCCTCGTCTCTATCATCTTCATCATCATCATCCTCAG
Seq C2 exon
CATCCGGTAGAGCGAAGATGAGCGTCTGTGGTCCAGGCAGTAAAACTCCATCATCTTCATCTTCATCATCTTCTTCAGCTGGTCCTCCGGCTAAAGTCCATCGTGCTCGCAAAACCATGAACAGACCGCCGCTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGACGTCCCTCCACAT
R:
GCGGTCTGTTCATGGTTTTGC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]