DreALTA0001735-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41162128-41162598:+
Coord C1 exon
chr24:41162128-41162208
Coord A exon
chr24:41162378-41162394
Coord C2 exon
chr24:41162395-41162598
Length
17 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
ACATGTTTTTATTAATATAGTGT
3' ss Score
4.6
Exon sequences
Seq C1 exon
GTTCAGGAGAATTCTCCAGCAGAGAGAGCCGGTCTGGAGCCCTTCTTTGACTTCATTCTGTCAATTGGACACACCAGACTG
Seq A exon
TGTGTGCTTGTGCTCAG
Seq C2 exon
AATAAAGAGAGCAGCACGCTGAAGGAGCTCCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGCAGGTTTACAGCAGTAAAGTGATGAGGGTTCGAGAGCTGGAGCTGGTTCCCAGTAACCTGTGGGGCGGTCAGGGGCTCCTGGGGGCCAGTGTTCGCTTCTGCAGCTTCACCGGGGCCGATCAATACGTCTGGCACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGAGCCCTTCTTTGAC
R:
CACCGGCTTCTCCACATTAGC
Band lengths:
108-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]