DreALTA0001918-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062687 | KCNH7
Description
potassium channel, voltage gated eag related subfamily H, member 7 [Source:HGNC Symbol;Acc:HGNC:18863]
Coordinates
chr6:10307898-10312169:+
Coord C1 exon
chr6:10307898-10308097
Coord A exon
chr6:10311914-10311925
Coord C2 exon
chr6:10311926-10312169
Length
12 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGA
5' ss Score
7.82
3' ss Seq
TCTGTCTCTTCCTCTCTCTGCAG
3' ss Score
0.8
Exon sequences
Seq C1 exon
CTCTGATGTATGCTAGTATCTTCGGGAATGTGTCCGCTATCATTCAGCGATTGTACTCTGGAACAGCTCGGTACCATCTGCAGATGCTTCGGGTCAAAGAATTCATTCGCTTCCATCAGATCCCCAACCCGCTGAGACAAAGACTCGAGGAGTACTTCCAGCACGCTTGGACATACACCAACGGCATCGACATGAACATG
Seq A exon
CAGGTATTGAAG
Seq C2 exon
GGTTTTCCAGAGTGCCTGCAGGCTGATATCTGTCTCCACCTGAATAAAACGTTGCTCCAGAGCTGCAAGGCCTTTCGTGGAGCGACCAAAGGTTGCCTTCGGGCACTGGCGATGCGCTTTAAGACCACCCATGCCCCACCGGGTGACACTCTGGTGCATGGTGGGGATGTTCTCACTGCCCTCTACTTTCTCGCCAGAGGGTCTATCGAGATCCTCAGAGATGACATTGTGGTGGCCATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062687-11-15,11-14,11-13-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.8=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGACAAAGACTCGAGG
R:
CTGCAGGCACTCTGGAAAACC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]