DreALTA0002018-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000097827 | LRP1 (2 of 2)
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr11:1722217-1725018:+
Coord C1 exon
chr11:1722217-1722414
Coord A exon
chr11:1724811-1724813
Coord C2 exon
chr11:1724814-1725018
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TCATACTTATTTCCCCTTAGCAG
3' ss Score
6
Exon sequences
Seq C1 exon
ATCCCTTCAAACCGTTCATCATCTTCTCCAACCGGCACGAGATCAGACGCATCGATCTTCATAAAGGAGAGTTCAGTGTGTTGGTTCCTGGTTTGAGAAACACCATCGCTCTGGATTTCCACCTCAACGAGAGCTCTCTCTACTGGACGGACGTCGTGGAGGACAAAATATACAGAGGGAAGCTGTCGGAGAATGGTG
Seq A exon
CAG
Seq C2 exon
CTCTGACCAGTTTTGACGTGGTGATCCAGTATGGATTAGCGACTCCCGAGGGTCTGGCTGTGGACTGGATTGCTGGAAACATCTACTGGGTGGAGAGTAATCTGGATCAGATTGAAGTGGCCAAGCTGGACGGGACGATGCGCACTACACTACTAGCTGGAGACGTGGAGCATCCGAGAGCCATTGCTCTCGATCCCAGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097827-26-29,26-28-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(47.8=32.8)
A:
NA
C2:
PF0005812=Ldl_recept_b=PD(50.0=32.9),PF0005812=Ldl_recept_b=WD(100=58.6),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCTGTCGGAGAATGGTG
R:
CAATCCAGTCCACAGCCAGAC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]