DreALTA0002160-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000089667 | MFAP4 (5 of 14)
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:HGNC:7035]
Coordinates
chr1:58296874-58297262:+
Coord C1 exon
chr1:58296874-58297041
Coord A exon
chr1:58297143-58297161
Coord C2 exon
chr1:58297162-58297262
Length
19 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CTCCCCATAATGGAATGAAGTTC
3' ss Score
-3.39
Exon sequences
Seq C1 exon
GACTAGAGAACCTCTACCAGCTGACACGACACAAGAAGTTCATGCTGAGAGTGGATCTGGAGGACTTTGAAGGAAGGAGAGGTTTCGCTCAGTACTCGTCCTTCTCTGTGGGTTGTGAATGTGAAGGATATAAACTGCAGGTGTCTGGATTCACTGATGGAGGAGCAG
Seq A exon
TTCTCCACCTTTGACAAAG
Seq C2 exon
ACCAAGACACATATGAAAAGAACTGTGCTAAAGAGTTTCTCGGGGGATTTTGGTACTCATCCTGTCACAATACGAACCCCAACGCTGTGTATTTATGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089667-4-5,4-4,4-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(29.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(28.6=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGTGTCTGGATTCACTG
R:
GCGTTGGGGTTCGTATTGTGA
Band lengths:
118-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]