DreALTA0002665-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000063182 | RC3H1 (2 of 2)
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:HGNC:29434]
Coordinates
chr2:7290698-7291849:-
Coord C1 exon
chr2:7291630-7291849
Coord A exon
chr2:7290786-7290788
Coord C2 exon
chr2:7290698-7290785
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGTAAAATCTTTTCTTTTAGCAG
3' ss Score
4.17
Exon sequences
Seq C1 exon
ACTGCAGAGGGAAAAGTTTTGCGTGAGCCTGCGCTGGACACACAGCGGCGCTCTGCAGAAGCCAAAGACGACGATCCCATCATTCCCTTTGGCCCTCTGCCCACTGTGTCTCCATTTGGTGCCATTTCGCGTACCTCTAAAACGGGTTACCAGACCACTGGGCCTGTGCAGGCCATAGCATCCTCACAGGCCTCAGGGCCCAAACACATGACGATGACAG
Seq A exon
CAG
Seq C2 exon
ACTATCCATATGGAAACCACAGCGGATGGGGTGGAGCGTCGTACCCCCAGCACCAGAGCATCAACTCTCAGGGACACTTCAGCGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063182-20-20,20-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=NA C2=0.934
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGCCCAAACACATGAC
R:
GAGTTGATGCTCTGGTGCTGG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]