DreALTA0002687-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000098654 | RFTN1 (2 of 2)
Description
raftlin, lipid raft linker 1 [Source:HGNC Symbol;Acc:HGNC:30278]
Coordinates
chr16:48938742-48946572:-
Coord C1 exon
chr16:48946464-48946572
Coord A exon
chr16:48939121-48939123
Coord C2 exon
chr16:48938742-48939120
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CCACTGTTTCATCCTCCCAGCAG
3' ss Score
6.98
Exon sequences
Seq C1 exon
CTGGGAGAAGAATCCGGCAGACTTTGAGCCGTACCATCTCAAACTGGAGGAATGCATGTCTGCCGAACAGATTCCCAGCACAGAGCACATCCAAGGCTACGTGAAGAAA
Seq A exon
CAG
Seq C2 exon
ATCCAGGATGCTGCAGATCAGGGCATCATTTTTGTGGGCTTTATCCAGGAGCCTGCTGGCCTCCGTCCACACGCACTGCAGCTTGGAGAACCAGAGGAGGCCTCACTTTCCCTGCACTCCAGCCCCAGCTCGCTGCATGGCTCCGGGCTCACACCATGCCCCAGTCCCCTGGAGGAGCCAGAGCCGGAGCCGAACCCGGAGCTGGGGGATGAATCTGGAGCAGAAAACCAAGAACAGAAGCAGGGAGGTGAAGCTCTGAAAGCTGGTGGAGACGCTGGAGGTGATGAAAACTCTGAAACACTGACACACAACAACAACGACACGGACAAAAGCACAGACACAAGCCAGAAAACCAGCAGGCTGGCCCTCAATAAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098654-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=NA C2=0.797
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(8.3=100)
A:
NA
C2:
PF152501=Raftlin=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAACAGATTCCCAGCACAG
R:
CAGCAGGCTCCTGGATAAAGC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]