DreALTA0003144-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4602900-4604875:+
Coord C1 exon
chr20:4602900-4603079
Coord A exon
NA
Coord C2 exon
chr20:4604760-4604875
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
CTTCACGTCTGGTACAGAAGCAT
3' ss Score
-5.24
Exon sequences
Seq C1 exon
CTAAAACAGACCGTGCATTCAAGGAGTTCCTGGAAGCGAGGAATCCCACAAAACAGCACTCGTCCACGCTGGAGTCGTACCTCATTAAACCTGTGCAGAGAGTCCTGAAGTATCCACTGCTGCTGAGGGAACTGGTGTCTCTCACTGACCCAGAGAGCGACCAGCACAACCACCTCACAG
Seq A exon
NA
Seq C2 exon
CATTAAAGGCGATGGAGAAAGTGGCCAGTCACATCAACGAGATGCAGAAGATCTACGAGGACTACGGCACAGTGTTTGACCAGCTCGTGGCAGAGCAGAGCGGCCCGGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233-26-27,26-26-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(31.6=100)
A:
NA
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCACTGCTGCTGAGGGAA
R:
GACTGGCCACTTTCTCCATCG
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]