DreALTA0003236-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000088631 | TRERF1
Description
transcriptional regulating factor 1 [Source:HGNC Symbol;Acc:HGNC:18273]
Coordinates
chr17:6100509-6105870:+
Coord C1 exon
chr17:6100509-6100604
Coord A exon
NA
Coord C2 exon
chr17:6105689-6105870
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTCTATGATTCTCCAAGCAGACA
3' ss Score
5.95
Exon sequences
Seq C1 exon
GGAGACTGGGCAACAAACAACCACAGCGAACCGAAGAAAGAATCCATCAGCAAAAGCAGGGACTCAGAAAACTCCAGCGCTGCGTTTGTCTGTGAA
Seq A exon
NA
Seq C2 exon
ACAAATGAAGAAACGTGGACCCAGAACAATCTCCGTCTGCTCTGCAGCTCTCCAGCAGAACACAGACCATCTGCTCTGACCGAGACTTTGGGTTCGGCTTCTGTGAGAAGTTCTCCATCCAACAGCACGACCAGCGGAGACACCGATTTGGCCCTCGTCTTCCCCTGCACAGAGTGTGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088631-14-14,14-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTCAGAAAACTCCAGCG
R:
TGGTCTGTGTTCTGCTGGAGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]