DreALTA0003263-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000005015 | TSPY2
Description
testis specific protein, Y-linked 2 [Source:HGNC Symbol;Acc:HGNC:23924]
Coordinates
chr8:25690480-25693581:-
Coord C1 exon
chr8:25693451-25693581
Coord A exon
chr8:25690581-25690586
Coord C2 exon
chr8:25690480-25690580
Length
6 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TACCTTTTTTTTCCTATTAGGTT
3' ss Score
10.16
Exon sequences
Seq C1 exon
CAGTGCTCCTAAACCTCAGGGCAGCAGTAATAGAGATGAGTGTGTGATCATCTCAGATTCCGATGAAGACGAAGAGCAGAATAGCCAAAGCCTGGGACAGGAGGATGATGAAGATGATGACCAAGGTGGAG
Seq A exon
GTTCAG
Seq C2 exon
AGGAGAATGAAAGAGATGAGGGGGAATCCTCCTGTGAAGAGAGAGATGAAGAGGAAGTGGATGTTGAGGAAGTAGAAGTGTCACATGACTCTGGTGGTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005015-9-8,9-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAATAGCCAAAGCCTGGG
R:
CTTCACAGGAGGATTCCCCCT
Band lengths:
95-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]