DreALTA0003271-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104035 | TTC16
Description
tetratricopeptide repeat domain 16 [Source:HGNC Symbol;Acc:HGNC:26536]
Coordinates
chr5:65279761-65280201:-
Coord C1 exon
chr5:65280065-65280201
Coord A exon
chr5:65279889-65279893
Coord C2 exon
chr5:65279761-65279888
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TGCATAATTGCTTGTTTTAGAGT
3' ss Score
6.64
Exon sequences
Seq C1 exon
GTGGTGCCATTGCTGTTAAGTCTGCTCCCAGGATGCTCCTTGACTGATATCATGTCGTGTGCCACTGCACAATCTGTCAAAACCCTGCTCATGGAAAAGATTGAAATGTTCAACCTTGCAGTCTCCTGTATGTCAAG
Seq A exon
AGTAG
Seq C2 exon
GCAGAATGGCCCTCGCCAAGGATGACAGTCAATCACAATCATCCTCACAGAAGTTACAGGGGCAGAAGACGGAACCTTGTGATACTACAGTAGACGTTCACAGCAAACTAGTCAAGAAAAAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104035-13-14,13-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACCTTGCAGTCTCCTGT
R:
TTCCGTCTTCTGCCCCTGTAA
Band lengths:
104-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]