DreALTA0003363-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101143 | VPS37B (2 of 2)
Description
vacuolar protein sorting 37 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:25754]
Coordinates
chr10:45058593-45063734:+
Coord C1 exon
chr10:45058593-45058764
Coord A exon
chr10:45063664-45063667
Coord C2 exon
chr10:45063668-45063734
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAAA
5' ss Score
1.84
3' ss Seq
TGTATTATTTTTCCCTCCAGGAA
3' ss Score
11.31
Exon sequences
Seq C1 exon
ATGCAGGAGATGCAGCAGAATAAAGAGCTGATGATGGCCAGCAATCGCAGTCTGGCGGAGATGAACCTGAACCTCCAGCCGGACCTCGACCACCAGAAGATTCAGCTCACCAAGCGCTACTGCTGTTTACAAGAGCTGCACGAGTCCTACCAGCTGCGCAGGAGCACGCTAG
Seq A exon
GAAG
Seq C2 exon
CAGTTCTCTAGACACACTACTGGCTCTCCTGCAGACCGAGGGAGCGAAGATCGAGGAGGAGACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101143-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF072008=Mod_r=FE(39.0=100)
A:
NA
C2:
PF072008=Mod_r=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGCTGCACGAGTCCTA
R:
GTCTCCTCCTCGATCTTCGCT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]