DreALTA0003481-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105295 | ZNF507 (11 of 11)
Description
zinc finger protein 507 [Source:HGNC Symbol;Acc:HGNC:23783]
Coordinates
chr1:57938121-57938809:+
Coord C1 exon
chr1:57938121-57938195
Coord A exon
chr1:57938291-57938641
Coord C2 exon
chr1:57938642-57938809
Length
351 bp
Sequences
Splice sites
5' ss Seq
TTGGTGTGT
5' ss Score
3.29
3' ss Seq
GTGTTTTGCTTTTGCTGCAGTTC
3' ss Score
8.21
Exon sequences
Seq C1 exon
GAAAACCACCGAGGAAATCAGGAAAGCGGAGCCCCCTCGAGCACACGGCGATCGCTTTATTAACATTGTGTGTTG
Seq A exon
TTCGTTTCATCCGTCATTATGGTGTGTATAACATATCTACACTAATCAAGCTCAAGGCTGACTCACAACAACATACTATCCAAAACACTCTGTTTCAATTGTTTACAAATCCACAACACACATAGTATTTAATGTGTTTTACTATCCTAAAAAACCAGCCTATGCTTGGTGTAAAACCACATTGGTTTTAGGGCATTTGGCCATTTCCAGCCTGGTCTTGGCTGGTCATCTCCCAGCCTGACCAGCTAAGACCAGGCTGGAAATGGTCGAAACCCCTCTAAAACCAGGCTGGTTGAGCAGCTTAGGCTGGTTTAAGCGTTTTCTTTTTAATGATGTGGTGTTTGTGTGCAG
Seq C2 exon
ATGTTGAGCATGGAGGTGCAGGTGGACGTGAGCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTCAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCGCTGGAGGCCAAGCTGAGAGAAAGAGGAGAGAAACTCCAGCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105295-0-2,0-1,0-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.196
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF066986=DUF1192=WD(100=89.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGAGGAAATCAGGAAAGC
R:
CTCTGGCTGGAGTTTCTCTC
Band lengths:
238-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]