DreALTA0003491-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104169 | ZNF638
Description
zinc finger protein 638 [Source:HGNC Symbol;Acc:HGNC:17894]
Coordinates
chr7:19381984-19382289:-
Coord C1 exon
chr7:19382099-19382289
Coord A exon
NA
Coord C2 exon
chr7:19381984-19382015
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTGTTTGTGTTGTTTAGCAGAAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
AAAAGAAGCGACTATAACAAAACCAATTCAGATACCGAAAGGAAAAGCTGCAAACGTAGTTAAGGTACCTCAGCCAGCTAAAGCAAAAGAGGTGACCGGTTTCAAGCCAACTCAAGCAACTAAGGGAAAACCAACAGAGATGAAAAAGACAGTGCCTGCAGCTAAACCTAAACCTCCTGCCAAGGTTCCAG
Seq A exon
NA
Seq C2 exon
AAACAGCAGTTGCCAAGAAGGTTGTAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104169-13-16,13-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACTCAAGCAACTAAGGGA
R:
ACCTTCTTGGCAACTGCTGTT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]