DreALTA0003707-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000013841 | abl2
Description
c-abl oncogene 2, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-020809-2]
Coordinates
chr8:14877430-14923663:+
Coord C1 exon
chr8:14877430-14877867
Coord A exon
chr8:14923499-14923501
Coord C2 exon
chr8:14923502-14923663
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTCTGTCTCTCTTCTGCCAGAAG
3' ss Score
8.62
Exon sequences
Seq C1 exon
TAAGCTAACGGAGCTCGGTCCGGTCCGGTGGAGGAGGTGGAAGAGGGGAGGAGAGTGACCGAAAACGGCAAGACTATCATCCCGAGCAGAACAGGCCGTAGTCCTGCCGTTCGTCCGTTGTGGGATGTGAACGGTCCAAACGGACGGCGGGTCTTTCCACGGATCTGTGTTATTTTCCCACCCAGAACACTCGTAGGATGGGACAACAGGTAGGCCGCGTGGGAGAAGGGGCTTCCTCGGGGATCCAGACCCAACCGCAGTCGCAACAGCAGCAGGGCAGGTCGAACCGGGCCAGCAGCTCCGGGAGGAGACCCAGAGACGGCGGCGGCGGCGGCAGCAGCACTCTCACCCTCACCGGGACTCCACCAGGCAGAAGTGCCGCTGCTGCAGTGAACATCATGCCGGACCCGGGGATCAATGTTTTCACCCTACACTCAG
Seq A exon
AAG
Seq C2 exon
CCCTGCACAGGCCGTTTGGACTGGACTCGACGGCGCTGACGGAGGCGGTGCGCTGGAGCTCCAAGGAGAATCTGCTGGGTGCTGCTGAAAGTGACCCCAACCTTTTTGTGGCACTTTACGACTTTGTTGCCAGTGGTGACAACACACTAAGCATCACGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013841-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001823=SH3_1=PU(38.3=32.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGATCAATGTTTTCACCCT
R:
CCAGCAGATTCTCCTTGGAGC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]