DreALTA0005079-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000017748 | arhgap29b
Description
Rho GTPase activating protein 29b [Source:ZFIN;Acc:ZDB-GENE-031010-44]
Coordinates
chr2:15524201-15527707:+
Coord C1 exon
chr2:15524201-15524303
Coord A exon
NA
Coord C2 exon
chr2:15526098-15527707
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
GTATTTTTTTTCTCAAGCAGGTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
AGTGCAAAACTCTACAAGAGACACTCGTCTGTGATCATCCCAGCTCAGCTCATGGAGGAAGGGAAGGAAATGAAGACTGGAGACCACAGAGTACAAACATCTG
Seq A exon
NA
Seq C2 exon
GTGAGGGCTCAGATGTCAACGGGGTTGGTTTGACTTCTGTTGACTCCACATCTGTGTTCAACCGGCCTGGTGCCAGCAGCCGAATGGTGCAGCTGAGACCTCAGCGTGCCAAGCCGGTGTCTCGACCAATCAGCATGCCCATAGACCGCCTACTCAACGAACGCAACAGCCGCAACACAGTGGAGCATGATCACTCACCCGCCGCCATTGAGGAGACCACTGAACCAGAGAAACCGACAACACCACGGCACACCAACTTTTACAGGAACCCCTTCATTGACACTCAGACGCTGAGGAGGACCTGGGACAGGCAGTACAGACATTATGACGTCACGCCCAGGACTGCAATGATAGTGGCCAACCTGCCACCTTCCGGTGTGCAGAAACAGCCTGAAATTAGTATGGGATCCCAAAGCAGCACCTCTAGAAAAGATGGTACAAGCCAGTCTGGTGTGGCTCCAATATCGTTCAGAGCAGCACGGACACTAAAACCCTCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017748-27-24,27-23-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.887
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCCCAGCTCAGCTCA
R:
CGTTGACATCTGAGCCCTCAC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]