DreALTA0006042-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17206077-17206377:+
Coord C1 exon
chr21:17206077-17206196
Coord A exon
chr21:17206258-17206301
Coord C2 exon
chr21:17206302-17206377
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCATCCATGCTCTTCTTAGCGT
3' ss Score
6.85
Exon sequences
Seq C1 exon
AGAGCCAACAAAGGGTCAAAAGTAATGGAGAGGCTGAAAAAGAAACTGTCAGAACAGGAATCTCTGTTTCTGTTGAACTCTCCCAACATGCCCCTTAGAGTCCACAACCGCAACGGGAAG
Seq A exon
CGTTCCTGCTCATGCTCACATTCCGTGTGGCTTATGGATTTCAG
Seq C2 exon
AGCTACATGTTTCTGATCTCATCGGACTACGAGCGTGCAGAGTGGAAGGAAGTGATCCGAGAACAGCAGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-18-15,18-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(24.8=100)
A:
NA
C2:
PF0016924=PH=PD(14.6=88.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCAAAAGTAATGGAGAGGCT
R:
ACGCTCGTAGTCCGATGAGAT
Band lengths:
144-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]