DreALTA0006419-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000052207 | c3a.3
Description
complement component c3a, duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-990415-37]
Coordinates
chr1:55622064-55624720:+
Coord C1 exon
chr1:55622064-55622255
Coord A exon
chr1:55624609-55624611
Coord C2 exon
chr1:55624612-55624720
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TCTGACATTTATCATTACAGAAG
3' ss Score
6.61
Exon sequences
Seq C1 exon
CTGGCCAATACACTGAAAAAATCCGGCCATGCTGCTATGACGGGATGAGGAATAACAGAATTGGCTACACATGTGAACGGCGAGCATCATACGTCATAGATGGAGAAGAGTGTGTCAAGGCCTTCTTGCACTGCTGCAAAGAGGTGAAAAACCACAAAGAGACTGAAGAGGAGGAGCTGATTCTGGCTCGTA
Seq A exon
AAG
Seq C2 exon
ATGATGAAGAGACTTATGAAGAGGATTATGAAGACTATGATGACATTACATCACGCAAGCAGTTTCCTGAGAGCTGGCTTTGGGAGGAGTTTGATCTCTGTGACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052207-27-30,27-29,27-28-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0182113=ANATO=WD(100=55.4)
A:
NA
C2:
PF0020717=A2M=PU(12.6=31.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAGCTGATTCTGGCTC
R:
AGGAAACTGCTTGCGTGATGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]