DreALTA0006644-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4554542-4555781:-
Coord C1 exon
chr21:4555689-4555781
Coord A exon
chr21:4554656-4554657
Coord C2 exon
chr21:4554542-4554655
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTGCTGTTTGTGTGTTGCAGAGG
3' ss Score
9.85
Exon sequences
Seq C1 exon
TCTCTGTTCCGCCCCGTCTGGGTCTTCTCTGTCATTGGCGTCTGCTGCTACTGAAGGTGACAGTGTGGCGTCAGGAGGAGCCAGTTCACACAG
Seq A exon
AG
Seq C2 exon
GGGAGTCAGTGGAGTCTTTCCCCATATTGAGTCGAAATGCAAGCCGAAACATGGAGCGAGACTGGGATAACGGCTCCACGGCCTCGTCCATCACATCTGTAGCAGAATACAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208-23-25,23-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.704 A=NA C2=0.664
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGCTGCTACTGAAGGTG
R:
TCGGCTTGCATTTCGACTCAA
Band lengths:
102-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]