DreALTA0006651-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45501161-45501871:+
Coord C1 exon
chr2:45501161-45501204
Coord A exon
NA
Coord C2 exon
chr2:45501805-45501871
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTTCTTTCTCTTTCAGCAGTTA
3' ss Score
7.26
Exon sequences
Seq C1 exon
GTTTCTTTTCTCTCTTAGGTCGCAACCTAACAATGATAGCTCAG
Seq A exon
NA
Seq C2 exon
TTATCAGGCGGTCGTCCTCCATGTCATATGTGGATGGATGTGTAGGGACATGGCCTAAAGAGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965-12-15,12-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF045758=DUF560=PU(25.0=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCTCTTAGGTCGCAACC
R:
AGGCCATGTCCCTACACATCC
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]