DreALTA0006669-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000052702 | capn1a
Description
calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]
Coordinates
chr13:42594771-42598585:-
Coord C1 exon
chr13:42598459-42598585
Coord A exon
chr13:42595018-42595050
Coord C2 exon
chr13:42594771-42595017
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
GTTGAGTGTGTGTGAATCAGTGT
3' ss Score
1.58
Exon sequences
Seq C1 exon
ATACACATACACACATATACTGACTGAAGCTGTAGCTAACACACACCGCTTGTCTATCGAGTGGATTATTACTGTATAATATCACACATCCCGTCAGAGAAGAGACTGACAGGACTGCAGCTGCAAG
Seq A exon
TGTTTATAGCAGCTCTGCATCTCACGGCTCCAG
Seq C2 exon
CATGTTCTCATACGGCGGGATCTCAGCACACATCAGCGCTAACAGACTGAAGGCGGATGGCGCAGGCTCTTTTGAGCAGGCTTTACACTTCCAGAACCAGGACTACGAGGCCCTCAGACAGGAGTGTTTAGAGGGAGGCTACCTGTTTGAAGACCCCTGTTTCCCCGCCGAACCGCCCTCTCTGGGCTTCAAAGAGCTCGCCCCGCACTCCTCCAAAACCCGAGATGTGGAGTGGATGCGCCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052702-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.037
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0064816=Peptidase_C2=PU(11.3=41.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACACACACCGCTTGTCT
R:
AGATCCCGCCGTATGAGAACA
Band lengths:
116-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]