DreALTA0006896-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000023645 | ccbl1
Description
cysteine conjugate-beta lyase, cytoplasmic [Source:ZFIN;Acc:ZDB-GENE-040426-2676]
Coordinates
chr5:32674385-32674830:-
Coord C1 exon
chr5:32674709-32674830
Coord A exon
chr5:32674490-32674504
Coord C2 exon
chr5:32674385-32674489
Length
15 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
3' ss Seq
CTAATGCGTTACTGATTTAGTTA
3' ss Score
4.38
Exon sequences
Seq C1 exon
GGAGCTCTCGCACATTCATTGGCTCAGACTGGGGGAAACACTAGAGAAGTAAATATGAAGGCTTTAACAGCTGAGGAAAATAAATGAACGAGGTTTCCCTGCTAAACAGAAAGTTTCCTTCG
Seq A exon
TTACTGCTTTAGCAG
Seq C2 exon
AAAACCTGCTGTAAAGTGTCTTGAAACACTGTAATGTGGAGGAGAGTGGCGGTGTATGGACCTTCGCTCTCAGTCAGATTAGCAATCGCAGGTTTTCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023645-0-2,0-1,0-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAACGAGGTTTCCCTGCT
R:
AAGGTCCATACACCGCCACTC
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]