DreALTA0007543-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14544732-14545227:-
Coord C1 exon
chr8:14544974-14545227
Coord A exon
chr8:14544893-14544895
Coord C2 exon
chr8:14544732-14544892
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
CAATGTCTCCTCCGCTTCAGCAG
3' ss Score
4.35
Exon sequences
Seq C1 exon
TCTTTTTGGCTCTGAGGGAAAGAAGTCTCCCCGAAGCGCTCTGGCGACTCCTGCTGCTGCTTCTCCAGCCAGCTCTGGTTCTTCTCGGTTGTCTCCAGGTGACTGTATCCCATCTAAAGGGTCTGTCCAAGGGTCAGGTTCCCCTCACGCAGCTCTACCCAGTTCCTCCTCATCTTCCTCTTCAGCAGTCCGGGCTAAATCCAACCCCTCGCCACATACTCAAAGCCCAGGAAGAACAGAGCACAGAACTACAG
Seq A exon
CAG
Seq C2 exon
AGCTCAAGTTTGCTCCTGGGGTCTTGCATCAGCGCCTGTCTGCTGAGCTCAACTACCTGGATGCAGTGGAGGAGTCGGTACGACAGCTCGGTGATGTGGAGAGAGTGAGAGGAGTGTCTCTCGCTCAGCAAGAAACCGTCTCACTTGCACAGATTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000-18-22,18-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCGGGCTAAATCCAACC
R:
GACCCCAGGAGCAAACTTGAG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]