DreALTA0007863-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000019342 | chrnd
Description
cholinergic receptor, nicotinic, delta (muscle) [Source:ZFIN;Acc:ZDB-GENE-030131-6665]
Coordinates
chr24:25544034-25544389:-
Coord C1 exon
chr24:25544283-25544389
Coord A exon
chr24:25544136-25544189
Coord C2 exon
chr24:25544034-25544135
Length
54 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGC
5' ss Score
5.38
3' ss Seq
TATTTGTTTCTTTTAAACAGCAA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GGCTGGAAAGATCATAGGCTTACCTGGAATGAATCAGAGTATGACATTCCTGTCCTGCGACTGCCACCAAGTATGGTGTGGTTACCAGAAATTGTTCTGGAAAACAA
Seq A exon
CAATGATGCCCAGTTTCAGGTGGCTTATTACTGTAACGTGCTGATTTATTCCAG
Seq C2 exon
TGGAGATATGTACTGGTTGCCTCCAGCTATATTTCGGAGCTCCTGCTCTATAAATGTCAACTACTTCCCCTTTGATTGGCAAAACTGCTCACTAAAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019342-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(15.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(23.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGACTGCCACCAAGTATG
R:
GCAGTTTTGCCAATCAAAGGGG
Band lengths:
141-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]