DreALTA0007922-5/7 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000013351 | cirbpb
Description
cold inducible RNA binding protein b [Source:ZFIN;Acc:ZDB-GENE-030131-5841]
Coordinates
chr22:18519472-18519854:-
Coord C1 exon
chr22:18519635-18519854
Coord A exon
chr22:18519490-18519530
Coord C2 exon
chr22:18519472-18519489
Length
41 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AATATTACTGTTGATTTTAGGAA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTGGTGGCGGATATGGCGGAGACAGAAGCTATGGCAGTGACAGGAGTTTTGGTGGTGACCGGAGCTATGGAGGAGACCGCAGCTATGGCGGTGGCGATAGAGGCTATGGTGGTGGGGAGAGAAGTTATGGAGGTGGTGACAGATCCTATGGTGGCGGCGGTGGTGGATACTCCAACAGGAGTGGAGGATACTCCAGCGGCGGTGGATACAGGGATAACAG
Seq A exon
GAACCAGGGGGGATACGACCGCTCTGGAGGATCCTACAGAG
Seq C2 exon
ACGGTTACGACAGTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013351-19-19,19-18,19-17,19-16,19-15,19-14,19-13-5/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.973
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]