DreALTA0007935-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1201820-1205405:-
Coord C1 exon
chr5:1205332-1205405
Coord A exon
chr5:1202012-1202014
Coord C2 exon
chr5:1201820-1202011
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GTGTGTGTGTGTTTGCTCAGCAG
3' ss Score
5.1
Exon sequences
Seq C1 exon
ATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAG
Seq A exon
CAG
Seq C2 exon
ACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781-13-16,13-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.662
Domain overlap (PFAM):
C1:
PF0238313=Syja_N=FE(13.6=100)
A:
NA
C2:
PF128742=zf-met=PU(52.0=20.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAATGAACCACCGGCCACT
R:
ATCTGCTGGAGCTCCACTGAT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]