DreALTA0007976-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38354081-38358411:+
Coord C1 exon
chr9:38354081-38354189
Coord A exon
NA
Coord C2 exon
chr9:38357868-38358411
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCTTTTCTCATCCTTAGCAGGGA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGCTCCATCATTGTGTCTACAGGAGCAGCACTGGAGAGGCAAACCTCGTTCACCTTTAATAAACCAACCCGTGTCATTTCACTCAAAATCCACCGCTAGACTCGGCAGA
Seq A exon
NA
Seq C2 exon
GGAGGACTTCTGAATTATGAAGCAACGCTCCGCCGGACCCTCTCTCTCCTGCTCTAGTTACCACGACTCCTGCCGCAACCGTGATCACTTCTGCCTCTGCTACTAGTGCTTGTGGCTGGGACAAAAAGGAGAATTCGCAGTTCTCGTCAGCTGTTGTCTGGTCACATATGGTGCATCGTTTGCATTCCTGAGTCGACATCCCTACCACTCAGTTTCTTGCCAGCCTGTGGATTTATCAACACAGGATATTAATAAGCGTGTCTTCTTGTTTTGCCTGGATCACACACGCTAAAGGCCTATTTTTTTCACTTTCCACTGCCACACGGGTGGTGGCAGGACATCATAGGCCATGGAGCCCAATATGGAGTACTGTCTGACCCAGGTGCTACAGAAGGATGTTGCGCGAAGGTTGCAGATGGGTCCGGAGCTCATCGACTACATCACAGATGCTGAAAAGTGTCAGGACTTGGAGAGTGACCAGACTGCGCTGGATAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280-0-6,0-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF123483=CLASP_N=PU(14.2=38.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACCCGTGTCATTTCACT
R:
AGAGCAGGAGAGAGAGGGTCC
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]