DreALTA0008036-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000022995 | clic4
Description
chloride intracellular channel 4 [Source:ZFIN;Acc:ZDB-GENE-030326-3]
Coordinates
chr17:25455774-25457345:+
Coord C1 exon
chr17:25455774-25455880
Coord A exon
chr17:25457164-25457229
Coord C2 exon
chr17:25457230-25457345
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
TAGCTAACTCTGTCACACAGCAT
3' ss Score
1.97
Exon sequences
Seq C1 exon
GTACTCTAAACTAGGTGCCAGACACCCAGAATCCAACACTGCAGGGATGGATATATTTGCCAAGTTTTCAGCATTTATCAAGAACTCTAAACCTGACGCCAATGAAG
Seq A exon
CATTGGAGAGGGGACTACTGAAGACTTTGCAGAAGCTGGACGAGTACCTGTGCTCTCCTCTTCCAG
Seq C2 exon
ATGAGATCGATCACAACAGCATGGAGGAGGTGAAGGCCTCCACACGTATGTTCCTGGATGGAGAAGAGATGACACTCGCGGACTGCAACCTGCTGCCCAAACTCCACATCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022995-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF134101=GST_C_2=PU(21.3=62.2)
A:
NA
C2:
PF134101=GST_C_2=FE(55.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCCAGAATCCAACACTGC
R:
TCCGCGAGTGTCATCTCTTCT
Band lengths:
168-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]