DreALTA0008045-2/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9231089-9233988:+
Coord C1 exon
chr19:9231089-9231224
Coord A exon
chr19:9233786-9233788
Coord C2 exon
chr19:9233789-9233988
Length
3 bp
Sequences
Splice sites
5' ss Seq
ACGGTGATT
5' ss Score
4.54
3' ss Seq
TTTTCCTTCTTCAACTCAAGCAG
3' ss Score
4.81
Exon sequences
Seq C1 exon
AAGACGCGTCGGGAGGAGGGGCCGGAAGTGTTTTTTTCTTCACCGTTTAATAATTAGACTTGAGTGAGAATTTGGGATCCGAAGCGTCAACACGGATTTTCTTTGGGATAAACGGACAGGGCTGGCTGCACAAACG
Seq A exon
CAG
Seq C2 exon
ATGCCACACTCCAGGCGGTATCCGTCCTCGGAGAGGGCCAGCCGCAGCAGCTACCAAGATCGATATAGAGAGCGGGACAGAGACAGAGATCGAGGAAGAAAACCTCGACATCGCCGCTCTCCAACCTATTCTTCCAGCAGTGAACGTGAGAGGAGAGCGAGAGGACACAGACAGGACACCGGCTATGCCAGATCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGGATAAACGGACAGGGC
R:
ATCGATCTTGGTAGCTGCTGC
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]