DreALTA0008047-2/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000062954 | clk2a
Description
CDC-like kinase 2a [Source:ZFIN;Acc:ZDB-GENE-030131-298]
Coordinates
chr19:9236583-9238890:+
Coord C1 exon
chr19:9236583-9236850
Coord A exon
chr19:9238797-9238799
Coord C2 exon
chr19:9238800-9238890
Length
3 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCTCTGACCTGTGGCCCAAGCAG
3' ss Score
0.49
Exon sequences
Seq C1 exon
CTACGACAACCGTTCTTCAGACCGCAGGCCATACGACAGACACTACGGCGAGAGCTACCGGCGCTTGGACCACAGCAGGGAACGGGACAGGGATCAAAACAGGGATCACCGGACGCCGAGCAACTACTACTCTCGCGACGCCTCGCCCAGCTACGACTTTCGCCGGGGACGCGACCGGGACCGCGAGGACTCATACCGGAGGAAAGGCAGCAGGCGTAAGCACAAACGAAGGCGGCGTAGAACCAGGTCCTATAGCGCATCCTCCTCG
Seq A exon
CAG
Seq C2 exon
CGGAGTGACAGCGGGACGAGGGCACTGTGTGTGAGGGACGACGAGGAGGGTCACCTGATCTGTCGGAGTGGCGACGTCCTGCAAGAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062954-2-8,2-7,2-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=NA C2=0.287
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATAGCGCATCCTCCTCG
R:
CCACTCCGACAGATCAGGTGA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]