DreALTA0008726-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000102517 | crtac1b
Description
cartilage acidic protein 1b [Source:ZFIN;Acc:ZDB-GENE-090312-28]
Coordinates
chr13:39962752-39968630:-
Coord C1 exon
chr13:39968487-39968630
Coord A exon
chr13:39962848-39962852
Coord C2 exon
chr13:39962752-39962847
Length
5 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCTTCCTTATTTTTCTGCAGCTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
ACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTGTAG
Seq A exon
CTCAG
Seq C2 exon
GTGGCTTATTTTGGAGGAAACAGATCCTCAGCCTCCAAACTCTTGGTTTCCTGTCTTTGGCCTCTTGTACTAACTTTCCTCGCTGTCTTTACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102517-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAATGACGAAGGGACTGC
R:
GAGGCCAAAGACAGGAAACCA
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]