DreALTA0008798-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000016074 | cryz
Description
crystallin, zeta (quinone reductase) [Source:ZFIN;Acc:ZDB-GENE-050306-24]
Coordinates
chr2:11335387-11335800:-
Coord C1 exon
chr2:11335690-11335800
Coord A exon
NA
Coord C2 exon
chr2:11335387-11335502
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
3' ss Seq
GCTGTTCATTTGTTATGCAGAGA
3' ss Score
5.67
Exon sequences
Seq C1 exon
CCGCATGCTTTTGTTTTGAGTACACAGTCGAGTACGGTGGCCGAAAACAGACAAAACTCTTTCATACGGAAGTCAGAAGCTCCAGCCAGTCAGCTGATACCTGCGTGATAG
Seq A exon
NA
Seq C2 exon
AGACCACCATGGCCGCATCTAGATTAATGAGGGCTGTCAGAGTGTCCGAGTTTGGAGGCCCTTCAGTTTTAAAACTCTGCTCAGACCTGCCTGTACCAAGTCCTGGTCAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016074-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082407=ADH_N=PU(3.0=5.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCAGAAGCTCCAGCCAG
R:
TACAGGCAGGTCTGAGCAGAG
Band lengths:
138-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]