DreALTA0008876-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000075972 | csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:ZFIN;Acc:ZDB-GENE-090312-137]
Coordinates
chr23:33714272-33728358:-
Coord C1 exon
chr23:33727700-33728358
Coord A exon
chr23:33714439-33714441
Coord C2 exon
chr23:33714272-33714438
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CCTGTCTGTATTGCCTTCAGAAG
3' ss Score
8.38
Exon sequences
Seq C1 exon
AAAAAAAGCCCCGAAGGCTCGGCTCTATCTGGTCTTTTTCAATGCAGGCGTTTTAAAGGATCACCTAGAGGTTTTATGTGCATTTATTGGACGCCTCAACGCCAGGATTTGTCATTTCTAGTGAATACGGTCCTTGTCTGCCTTCGTCTGCCCCGTTTTTTATCTTTACAGAGCTTGACTGCAACGTTGAATTCTCGCATAGGCTTCTTAACACACAAACCCCCCATTTACACTCCACGTAAAGACTAATATCCATTGTTTACGATGCTTAAATGTTCAGACATCACTATATCTTCGTGAAAAAGCTGATATTTCCTCTTTGGTCTGGTCATTTCCATGGGCTGAAGTCGCTTTTGTCTGTCATCTCGTAACCTTGTGGAAGTCTAAAGCTGAAATATTGGCTCAGAAAATCCCCAAAGAACAGAAAACCATCCAAATAAAGGAAGCACAGGAACGAGCGACAGATTCGGCGGTTTAAAGGCTGTGTATTTCTGCCCAAG
Seq A exon
AAG
Seq C2 exon
CAGTGTTTCCATGGAGACAGTGTCATCTCGCGGCCTGAAGCGCAGATTCGAGGAGGTGGACAGCGGCTCGCCGTGCTCCACACCCAAAGACTCAGATGATGACATCTCCAGCAGTGACAGCGCTGACAGCTGCGACAGTCTCAACGCTCCCTCCAGCTCCCTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075972-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.943
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGGCGGTTTAAAGGCTGT
R:
GCTGTCCACCTCCTCGAATCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]