DreALTA0008953-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003779 | ctnnd2b
Description
catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
Coordinates
chr2:30630409-30634740:-
Coord C1 exon
chr2:30634574-30634740
Coord A exon
NA
Coord C2 exon
chr2:30630409-30630763
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
GCTCTCCCTTTTCCATGCAGGCT
3' ss Score
9.99
Exon sequences
Seq C1 exon
GACCAGGCATCCTCTCTCAGAGTGCTCTGCAGCTCAATAATCAGGAGGGCACCTTTCCCTATCCAGTCAGTTACCATAGCAACCAGACCCTGGCCCTCGGCGACCTGTCGGCCTCTCAGCCGCCTCGCAGTGGTCAGGTGGGAGGAGCCTTACATAGCTATAATCAG
Seq A exon
NA
Seq C2 exon
GCTTTGGGCTCCCCCTCCAAACTGCAGAGGCTGGGCTCAGCCTCTGACATGCCCAGCTATGCCACTCTGGCGCGGGTGTCGTCGCCCAAGCAGTCCCCCAGCCGGCTGGCCAAATCCTACAGCACGAGCTCTCCCATCAACATGGCGGCGGGAGGAGGGTCGTCTTCTTCACCACTACACATGGCCGGAGCGGGCAATGTCTCCAACTCGTCTCCGCTGCACCAGCTCAGTGCCGCCGTAGGAAGCTACGCCACTCTGTCACCCACCAAGCGTATGCTGCACACCACCGACCAGTACAAGATCTCTCATGATTTGTACGCCAACGCCACACTTCAGAGACCGGGCAGTCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003779-13-12,13-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=0.732
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGGGAGGAGCCTTACAT
R:
GACGAGTTGGAGACATTGCCC
Band lengths:
245-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]